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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actaacatatgatgtgaaacgtacctcaaaatgagtaagaagctatggaaacatgaggattgaccttacagatcctgaaacttatgaaccacaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTGCTATACGGTCTCCTACGGTTCGAGCCATCGGAACGCCTGACAGCAGAAG

Basic information

species Zea mays
transcript GRMZM2G094039_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6031579|gb|AW076481.1|AW076481
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
EST: gi|88748004|gb|DY532145.1|DY532145
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
EST: gi|16925980|gb|BM079048.1|BM079048
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
EST: gi|50333914|gb|CO529040.1|CO529040
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
EST: gi|149082188|gb|EE171368.2|EE171368
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
EST: gi|18167576|gb|BM337416.1|BM337416
EST:     CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAG                         GACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAGGAAACTGGATCGACTAAAGgttttagttc ... acaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaacatgaggattgaccttacagatcctgaaacttatgaaccacaactacagGACTTGGTATCGAGGAACGCTGACCATTCAAAGGTGGCACTGGTGGACTTGCTATACGGTCTCCTACGGTTCGAGCCATCGGAACGCCTGACAGCAGAAG
                 accttac  putative branch site (score: 3)
                                aaacttat  TA-rich tract