1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagccacctgataccctttatgaaactttagtatttctcaacaaatattaagatattctctttataagttaaaaaaagttagaaatcctgcaagcttaacatatgcgcttccgtcatttttccccttttggcttcatatttcaattgtgacctgaaaattctccgtgcttctacaatttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCATGTGTGAGGCTCCTAAGCAG
species | Zea mays |
transcript | GRMZM2G093359_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACCATATCACCATGGATTGGTACTCTTGATGCTTTGAAGCCTTTCAEST: gi|78180016|gb|DV550389.1|DV550389
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCAEST: gi|6973663|gb|AW438237.1|AW438237
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCAEST: gi|149106513|gb|EE188405.2|EE188405
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: CAGGCTTGGGAGACTATACCTCTTGGACCTTTCCCTTGG-AAAAGCTTCA GTACCACCATATCACCCATGGATTGTTTACTCTTGATGCTT
genomic: CAGGCTTGGGAGACTATACCTCTTGGACCTTTCC-TTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACC-ATGGATTGTT-ACTCTTGATGCTT
gcttcatatttcaattgtgacctgaaaattctccgtgcttctacaatttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCATGTGTGAGGCTCCTAAGCAG
tttctct CT-rich tract
atatttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccacctgataccctttatgaaactttagtatttctcaacaaatattaagatattctctttataagttaaaaaaagttagaaatcctgcaagcttaacatatgcgcttccgtcatttttccccttttggcttcatatttcaattgtgacctgaaaattctccgtgcttctacaatttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCATGTGTGAGGCTCCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC