Sequence
atgc intronic sequence ATGC exonic sequencegtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 8
----------------gtattaccccaaatcttgcattgttctgctactttagt----tattttggccagatttatatatcctgacctt----tgcttatgt-tgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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gtaatgaaaatcctacattcttctacacttctctagttatttgatgaatttatgcctatcttctctccgctGTTATAAAAATCAACCTTGCTTCTCTCACACATGTAATAACTATGCAGGTTATAAAAAATTCTAATGGATGTAATCTTGCTGTTGACATATGGAGCTTAGGATGCACGGTTTTAGAGATGGCTACCTCAAAACCACCATGGAGCCAAT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G30100.2 (Glycine max), 3'ss of exon 2
------gtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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gttctaatattttctttaaaccttttttctttta-tattttgattgtgtc--ttagatctgtggctcagtatcattgctt----tctgatga---ttcagGTTATAAAAAATTCTAATGGATGCAACCTTGCGGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACCAAACCTCCTTGGTTTCAGT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G01880.1 (Glycine max), 3'ss of exon 7
gtattaccccaaatcttgcatt-gttctgctactttagttattttggccagatttata---tatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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--gtcagaatgatttctacatccattcaacactttttgttgcagatgctttgtctgtagtatattcttatctttgt---cactgcctcaattacatagGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTAGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGCCAAT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 8
gtattaccccaaatcttgcatt-gttctgctactttagttattttggccagatttatatatcctgacctt-tgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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--gttgtaatattttctctgttagttttggtccttta-tagattcaattacatcttggttttgtgactttatagctttgctttc-tgatttttcagGTTATAAAAAACTCTAATGGTTGCAACCTAGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
------gtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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gttctaatattttctttaaaccttttttttatatatattttgattgcatc--ttagatctgtgattcagtatcattgctt----tctgatga---ttcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G24970.2 (Glycine max), 3'ss of exon 7
gtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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--gttgtaatattttctctgttactttcagttctttatagattcaattacatattggttttgtgacttgatagctttgcattctgatttttcagGTTATAAAAAACTCTAATGGTTGCAACCTAGCTGTTGATATATGGAGCCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAACCTCCTTGGAGTCAGT
upper sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 9
gtattaccccaaatcttgcattgttctgctactt-tagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
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--gtcagcctgg--ttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatttgattgaatt-----tatcattcagGTCATAAAGAACTCAAATGGCTGTAATCTTGCAGTCGATTTATGGAGTCTTGGGTGCACAGTTTTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78116720|gb|DV535107.1|DV535107EST: AGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAG GTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTA
genomic: AGCAGTGCCCTTTCTCATTTAAGGGTAGCCCATACTGGATGGCTCCTGAGgtattacccc ... aaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
tcctgac putative branch site (score: 2)
agatttatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA