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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttaccttcatgatagcctattatatggtagacttcacataacaatttatattttttgacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTGGCCTCACGGGTGCAGACTATCCGTGCTTCGTTCTGTCCACTTCTTTCC

Basic information

species Zea mays
transcript GRMZM2G093239_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093239_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g56860.1 (Oryza sativa), 3'ss of exon 9
gtgtgttaccttcatgatagcctattatatggtagacttcac------ataacaatttatattttttgacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTGGCCTCACGGGTGCAGACTATCCGTGCTTCGTTCTGTCCACTTCTTTCC
||| || | | | |   ||   | ||||   ||  |||  ||       |||| |||| | || || | |||||||||||  | |||||| | |||||||||||||| || |||||||||||||||||||| |||| ||||||||  ||||||||||| ||||||||||| ||||||
gtgcgtgatcattactgta---tgttatgctgttaactctacttttttgtaactatttgtgttgttggtcatttcagCATTGCAACAGATTCCAAGGGATACTTGACCCTAATATGCTCCCTAAAATTGGCGTCACCGGTGCAGAGCATCCGTGCTTCTTTCTGTCCACTCCTTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113700998|gb|EE678502.1|EE678502
EST:     TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG                         CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: gi|78108751|gb|DV527168.1|DV527168
EST:     TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG                         CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: gi|71431087|gb|DR812137.1|DR812137
EST:     TGTCCAGTATTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG                         CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
EST: gi|32870682|gb|CF010364.1|CF010364
EST:     TGTCCAGTACTTCTTTCTTGTGCTCAGGATGGAAACCTTTCTTTTTTCAG                         CATCACGACAGATGCTAAGGGATACCTTGACTCTTATATGCTCCCTAAAAT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATA-CTTGACTCTTATATGCTCCCTAAAAT
EST: gi|76908768|gb|DV163090.1|DV163090
EST:     TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAG                         CATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT
genomic: TGTCCAGTACTTCTTTCTTGTGCTCAAGATGGAAACCTTTCTTTTTTCAGgtgtgttacc ... gacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagcctattatatggtagacttcacataacaatttatattttttgacatttcagCATCACGACAGATGCTAAGGGATACTTGACTCTTATATGCTCCCTAAAATTGGCCTCACGGGTGCAGACTATCCGTGCTTCGTTCTGTCCACTTCTTTCC
                                         ttttgac  putative branch site (score: 3)
                                       ttttttg  CT-rich tract
                        acataacaatttatat  TA-rich tract