1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcttctgtctgtgcacccaaaatgtctgtactctgtagtttgaattatatgcaatcagtttattttcctgatttttattttatttatttttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAGTAAAAATTCTTCATGAGTGTCGACTGCTGCGGGAGCGGCTACAAGACT
species | Zea mays |
transcript | GRMZM2G093065_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAG AGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAEST: gi|110207810|gb|EC889707.1|EC889707
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAGgtacagtaat ... ttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGA
EST: AGATGAAGAAAGGGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAG AGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAEST: gi|211241304|gb|FL421834.1|FL421834
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAGgtacagtaat ... ttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAG AGAGTTATTAATAGAGAGAAACAGAGATCAGCACGTACAAAGTTATCCCGAEST: gi|71774030|gb|DR971916.1|DR971916
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAGgtacagtaat ... ttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAG AGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAEST: gi|60397130|gb|DN229946.1|DN229946
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAGgtacagtaat ... ttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGA
EST: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAG AGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTAT
genomic: AGATGAAGAAAGTGTTGAATCAGTATCTTGAGGAGAAGACTGATTTAGAGgtacagtaat ... ttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTAT
ttatatgcaatcagtttattttcctgatttttattttatttatttttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAGTAAAAATTCTTCATGAGTGTCGACTGCTGCGGGAGCGGCTACAAGACT
tcctgat putative branch site (score: 44)
ttttatttattttt putative PPT
aatcagtttattttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttctgtctgtgcacccaaaatgtctgtactctgtagtttgaattatatgcaatcagtttattttcctgatttttattttatttatttttggtttcagAGAGTTATTAATAGAGATAAACAGAGATCAGCACGTACAAAGTTATCCCGAGTAAAAATTCTTCATGAGTGTCGACTGCTGCGGGAGCGGCTACAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-gcttctg
- - - - - -gtgcacc
- - - - - - - - - - - atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - tatgcaa