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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attagcattgccttgtttcatttgatcttccattgctatagggttccaggcagattatcctgtaaaactgatatttgtttgtcatggttttccatcctagGACTGGGCCTCGCAGACTGCAACGCAGATCGCAACACAGCTATGTGGGTTTGTGACCATTGTCGCGGGGACTTTTCTGCTTCACAAGACTAGGGATATGG

Basic information

species Zea mays
transcript GRMZM2G092991_T04
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g29510.1 (Oryza sativa), 3'ss of exon 8
attagcattgccttgtttcatttgatcttccattgctatagggttccaggcagattatcctgtaaaactgata--tttgtttgtcatgg--ttttccatcctagGACTGGGCCTCGCAGACTGCAACGCAGATCGCAACACAGCTATGTGGGTTTGTGACCATTGTCGCGGGGACTTTTCTGCTTCACAAGACTAGGGATATGG
   ||  ||     |||  | |   | ||   |   |  |      | | ||   |  | | |    ||||||  ||||    || | |  ||||| || | |||| |    ||| | || |||||| ||||| ||||||||| ||||||| ||||||||||| || || || |||||||| || |||||||||||||||||||
---agtgtt-ttgagttcaaataactgttttgtatttccaattcaactgacaatctgccatttttgtctgatatatttggccatcgttgccttttctattccagGATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTTGTGACCATCGTTGCAGGAACTTTTCTCCTGCACAAGACTAGGGATATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaggcagattatcctgtaaaactgatatttgtttgtcatggttttccatcctagGACTGGGCCTCGCAGACTGCAACGCAGATCGCAACACAGCTATGTGGGTTTGTGACCATTGTCGCGGGGACTTTTCTGCTTCACAAGACTAGGGATATGG
                    aactgat  putative branch site (score: 3)
                                          ttttccatcct  putative PPT
                 taaaactgatattt  TA-rich tract