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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaatgtattctcatatttgttttatgaatcctagtcgctgtaatttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA

Basic information

species Zea mays
transcript GRMZM2G092776_T07
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T04 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 7
------------------------------gtatggaatg-tattctcata-tttgttttatgaatcctagtcgctgtaat-ttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
                               |   ||    ||||||  || |||||  | ||   ||   |    | |   |||   | |||  ||      |||| |||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
gtatagagtggtttttttgacatgttctttttgctgatcactattctagtactttgtcatgtgttaccagctaagagcatccttaaaaatataatttcaagagttgaataatgtctggcagGTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020360|gb|CO449109.1|CO449109
EST:     GAGGAGGATTTCTGGAAACCTTGGGAAGGATGGAAGGATAACCTANAGAA                         GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT
genomic: GAGGAGGATTTCTGGAAACCTTGGGAAGGATGGAAGGATAACCTAGAGAAgtatggaatg ... tgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT
EST: gi|74233198|gb|DT641112.1|DT641112
EST:     GGAAGGATGGAAGGATAACCTAGAGAA                         GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT
genomic: GGAAGGATGGAAGGATAACCTAGAGAAgtatggaatg ... tgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctagtcgctgtaatttattcacatatcttacgcttttgattaatgtttgacagGTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAA
                                       gattaat  putative branch site (score: 3)
            taatttattcacatat  TA-rich tract