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...ttttttgtttctgtatgtggctgggaaaaatgtttttatgcattctgatatcatatcccatttggcactgatgacttgcttaccttttttttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCAACTTCTTTGAGAAATAAGGAGATGATCGGTAAATCAGACCCTTATGTG
species | Zea mays |
transcript | GRMZM2G092129_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTYTGTTACTGTGGTAAAAGCEST: gi|211335355|gb|FL444766.1|FL444766
genomic: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
EST: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCEST: gi|67025946|gb|CO454695.1|CO454695
genomic: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
EST: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCTATGTTGATA-GAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCEST: gi|67011685|gb|CO440434.1|CO440434
genomic: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
EST: CACACA-GCTTGTTGTTAAACTTGGTGTCAATGTTGCTACGAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCEST: gi|211220820|gb|FL457379.1|FL457379
genomic: CACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
EST: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCEST: gi|111145863|gb|EE258112.1|EE258112
genomic: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
EST: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAG TGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
genomic: TTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttcc ... ttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGC
tgatatcatatcccatttggcactgatgacttgcttaccttttttttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCAACTTCTTTGAGAAATAAGGAGATGATCGGTAAATCAGACCCTTATGTG
tgcttac putative branch site (score: 214)
cttgcttacctttttt CT-rich tract
ttaccttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgtttctgtatgtggctgggaaaaatgtttttatgcattctgatatcatatcccatttggcactgatgacttgcttaccttttttttatccctagTGACTTGGAGCTTAAACCTCAGGGAAGACTTTCTGTTACTGTGGTAAAAGCAACTTCTTTGAGAAATAAGGAGATGATCGGTAAATCAGACCCTTATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG