1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgtttgaaacttgtaaaaacttttgtgccagtctactgttacttggatacccgaccaaagatctgaaattctaacttacatgcgccaaatttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGGTGGTAAAGCATATATTCGTGACCGGAAAGAAGTTATACAGGAGATCAAA
species | Zea mays |
transcript | GRMZM2G092120_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGTACGATCTACTTCATGCATCTGGTCTTTTCTCAAAGGAGCAGAACAG GTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGGEST: gi|5006199|gb|AI712261.1|AI712261
genomic: ACGTACGATCTACTTCATGCATCTGGTCTTTTCTCAAAGGAGCAGAACAGgtatgtcttt ... atttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGG
EST: ACGTACGATCTACTTCATGCATCTGGTCTTTTCTCAAAGGAGCAGAACAG GTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGGEST: gi|76912991|gb|DV164963.1|DV164963
genomic: ACGTACGATCTACTTCATGCATCTGGTCTTTTCTCAAAGGAGCAGAACAGgtatgtcttt ... atttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGG
EST: ACGTACGATCTACTTCATGCATCTGGTCTTTTTTCAAAGGAGCAGAACAG GTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGG
genomic: ACGTACGATCTACTTCATGCATCTGGTCTTTTCTCAAAGGAGCAGAACAGgtatgtcttt ... atttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGG
tggatacccgaccaaagatctgaaattctaacttacatgcgccaaatttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGGTGGTAAAGCATATATTCGTGACCGGAAAGAAGTTATACAGGAGATCAAA
tttttgt CT-rich tract
aaatttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtttgaaacttgtaaaaacttttgtgccagtctactgttacttggatacccgaccaaagatctgaaattctaacttacatgcgccaaatttttgtagGTGTAATATCTCTAGCATCTTGCTGGAGATGGACCGGATACTCAGACCAGGTGGTAAAGCATATATTCGTGACCGGAAAGAAGTTATACAGGAGATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA