1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataccctacatcgctggctcatgattctatatagttcacgtctgaatgtgtctgaccactcactctagttccataataattttcttagcactgagccatgcacatccgtttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGAAAGGCTCAACGCCCTCAATTCCTCGGGTGGTGTCGATGATGATGAGGAT
species | Zea mays |
transcript | GRMZM2G090738_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAG GTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGAEST: gi|60345048|gb|DN212021.1|DN212021
genomic: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtatacccta ... tttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGA
EST: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAG GTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGAEST: gi|166704350|gb|EG222804.1|EG222804
genomic: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtatacccta ... tttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGA
EST: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAG GTACAACCCCAAGAAGEST: gi|67024091|gb|CO452840.1|CO452840
genomic: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtatacccta ... tttatttaagGTACAACCCCAAGAAG
EST: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAG GTACAACCCCAAGAAGTTGACCTATGAGCAGAGGAAGGCCANACTCGTGGAEST: gi|60347188|gb|DN214161.1|DN214161
genomic: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtatacccta ... tttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGA
EST: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAG GTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGA
genomic: GATCCTAGCATGGCCAAGTCAACAAAGGCGCAACCAAAGGAGCACAAGAGgtatacccta ... tttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGA
tctagttccataataattttcttagcactgagccatgcacatccgtttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGAAAGGCTCAACGCCCTCAATTCCTCGGGTGGTGTCGATGATGATGAGGAT
tccgttt CT-rich tract
ataataattttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataccctacatcgctggctcatgattctatatagttcacgtctgaatgtgtctgaccactcactctagttccataataattttcttagcactgagccatgcacatccgtttatttaagGTACAACCCCAAGAAGTTGACCTATGAGCAGAGAAAGGCCAGACTCGTGGAAAGGCTCAACGCCCTCAATTCCTCGGGTGGTGTCGATGATGATGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT