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...tatattcattcagtactggaagtccttgtcgaccaagtggacttaaactctgcttttaagttgaagtttccatgcttgaattttttgtgatatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAATTGGCTGCTGATTTGAAAGGCCGAGTTAAATTGGAGGATGCTGGTTTTG
species | Zea mays |
transcript | GRMZM2G090087_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|211226663|gb|FL216925.1|FL216925
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|211228708|gb|FL216926.1|FL216926
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|67019711|gb|CO448460.1|CO448460
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|33101148|gb|CF061108.1|CF061108
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|67026280|gb|CO455029.1|CO455029
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|67024223|gb|CO452972.1|CO452972
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|32800408|gb|CD952644.1|CD952644
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|211228710|gb|FL216928.1|FL216928
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|32846970|gb|CD986651.1|CD986651
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAAEST: gi|211228712|gb|FL216930.1|FL216930
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
EST: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAG GCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
genomic: TGGATTTCATAAATTCTGATGGTGCCGTAATGAACAAGCTTCTGTTAGAGgtatgaatgg ... tatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAA
aactctgcttttaagttgaagtttccatgcttgaattttttgtgatatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAATTGGCTGCTGATTTGAAAGGCCGAGTTAAATTGGAGGATGCTGGTTTTG
aattttttgtgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattcattcagtactggaagtccttgtcgaccaagtggacttaaactctgcttttaagttgaagtttccatgcttgaattttttgtgatatcatgtagGCTAATCCGAAAATGACCCTTTTCACTGGGAGTTCACGGGTAGCAGAGAAATTGGCTGCTGATTTGAAAGGCCGAGTTAAATTGGAGGATGCTGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG