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gtaatacgttgtctatcatttttcccataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGAGAGCTGAATAAACCTTGGAGGACATCATAAGTCATTTTGGCTATGTTC
species | Zea mays |
transcript | GRMZM2G088653_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|5455863|gb|AI833553.1|AI833553
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|71305240|gb|DR788757.1|DR788757
genomic: TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|78084564|gb|DV512957.1|DV512957
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTTTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGGGAAGGAAATACTGAGTTTGEST: gi|37388193|gb|CF631303.1|CF631303
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|86471498|gb|DY237868.1|DY237868
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTATTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|22542666|gb|BU093104.1|BU093104
genomic: AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|5439429|gb|AI820350.1|AI820350
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|78025320|gb|DV493707.1|DV493707
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGEST: gi|12971305|gb|BG267416.1|BG267416
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST: TCAAATCCATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
ataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGAGAGCTGAATAAACCTTGGAGGACATCATAAGTCATTTTGGCTATGTTC
aaacaaaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacgttgtctatcatttttcccataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGAGAGCTGAATAAACCTTGGAGGACATCATAAGTCATTTTGGCTATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA