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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactaacggcatctttattccgacttggcttctcaaataacagcctttctgctttactaattattctgccctctctctgtctctctctcttattttttctctctctcttctttcgctgctttgtggttgtgacagGAATACTAGAAGCCAAGAAAAGCGATGGTGGAATATATAGGGAAAAAAAAAGGAGTCGAGTGTCAGCATAGTGTTAGCTCCCTTATGTTCTAGTACCTTT

Basic information

species Zea mays
transcript GRMZM2G086614_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086614_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 8
gtaagcact-aacggcatctttattccgacttggcttctcaaataacagcctttctgctttactaattattctgccctctctctgtctctctctcttattttttctctctctcttctttcgctgctttgtggttgtgacagGAATACTAGAAGCCAA-GAAAAGCGATGGTGGAATATATAGGGAAAAAAAAAGGAGTCGAGTGTCAGCATAGTGTTAGCTCCCTTATGTTCTAGTACCTTT-----
||||||||| ||      ||||||||| |||  |||||  |||||| |  | ||   | || || ||| | |||                   |||| |||| | ||     ||| ||||     | | ||  ||||||||||| || |||||| || |||||||||| ||||||||||        | |||||||||  |||||||||||||||||||||||||| | |  |  |   |       
gtaagcacttaatccttcctttattcccactatgcttccaaaataataagcctttcacctt-ctgattttgctg-------------------tcttgttttctttccgctccttttttc-----tatttgtctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATA------GGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTGTTTATTTCTTTTTGGTTGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctcttattttttctctctctcttctttcgctgctttgtggttgtgacagGAATACTAGAAGCCAAGAAAAGCGATGGTGGAATATATAGGGAAAAAAAAAGGAGTCGAGTGTCAGCATAGTGTTAGCTCCCTTATGTTCTAGTACCTTT
            ttttttctctctctct  CT-rich tract
       tcttatttttt  TA-rich tract