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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacagagagctaacctcacggagttttttggttgacatatctttcatgataccggatgaatggtctgggaactaagcaaactataatgaataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTGATTTGAGTGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGG

Basic information

species Zea mays
transcript GRMZM2G086052_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91048588|gb|EB159006.1|EB159006
EST:     AAAAGGGAATAGTGTCGGATAGTCTTCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCGGGCTCCGCT
genomic: AAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|22542289|gb|BU092727.1|BU092727
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|211258233|gb|FL463465.1|FL463465
EST:     GGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: GGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|76015304|gb|DT942474.1|DT942474
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|60359085|gb|DN226058.1|DN226058
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71313521|gb|DR793328.1|DR793328
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|26559508|gb|CA831743.1|CA831743
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71326242|gb|DR799815.1|DR799815
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|87156799|gb|DY401588.1|DY401588
EST:     CTCTTATTATTGACTATGGAAAAAACGGAATAGTATCCAATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|78090508|gb|DV518882.1|DV518882
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|74243641|gb|DT651555.1|DT651555
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|78108017|gb|DV526435.1|DV526435
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
EST: gi|71297895|gb|DR784918.1|DR784918
EST:     CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAG                         GCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT
genomic: CTCTTATTATTGACTATGGAAAAAATGGAATAGTGTCCGATAGTCTCCAGgtttggattt ... ataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgataccggatgaatggtctgggaactaagcaaactataatgaataaatacagGCCATCCGCAAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTGATTTGAGTGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGG
                                 aaactataatgaataa  TA-rich tract