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...ttgtacaagagctaccatgagtcaccgtgttattaaccctctttgtcgttgtacagaattgtgttctattgtgtattaatttgttacactgatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTACAATGGGAACTGCTGATACCTTGATTGAGACATTTTGACGCCAGAGCG
species | Zea mays |
transcript | GRMZM2G085670_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|211111835|gb|FL481580.1|FL481580
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927397|gb|CF032209.1|CF032209
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32934734|gb|CF039546.1|CF039546
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|71764777|gb|DR962714.1|DR962714
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCTGACCAAAGAG GAGGCGACTACCACTGGCGTEST: gi|16925930|gb|BM078998.1|BM078998
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|211195517|gb|FL100641.1|FL100641
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927878|gb|CF032690.1|CF032690
genomic: GGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|50325880|gb|CO521006.1|CO521006
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32933246|gb|CF038058.1|CF038058
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927819|gb|CF032631.1|CF032631
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927866|gb|CF032678.1|CF032678
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927641|gb|CF032453.1|CF032453
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|32927565|gb|CF032377.1|CF032377
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCATTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|78090434|gb|DV518808.1|DV518808
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|211226565|gb|FL435978.1|FL435978
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTEST: gi|78090435|gb|DV518809.1|DV518809
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
EST: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG GAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
genomic: GAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAGgtaataaaat ... gatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCT
tcgttgtacagaattgtgttctattgtgtattaatttgttacactgatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTACAATGGGAACTGCTGATACCTTGATTGAGACATTTTGACGCCAGAGCG
tattgtgtattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtacaagagctaccatgagtcaccgtgttattaaccctctttgtcgttgtacagaattgtgttctattgtgtattaatttgttacactgatattgcagGAGGCGACAACCACTGGCGTAGTTTCAATTAAGCCCTTACAAATCTCTCCTACAATGGGAACTGCTGATACCTTGATTGAGACATTTTGACGCCAGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT