1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattcacccagatcattggctaccttgcctggattgtttcaacgcaatacttcaattatgacattaatcttttctaaataattgttgttgtaacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
species | Zea mays |
transcript | GRMZM2G084463_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAG AAGTTGCTTTCTCTGGATGATGACGAAGAAGATTCAGATGANNNNNEST: gi|31349977|gb|CD434334.1|CD434334
genomic: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAGgtaattcacc ... taacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
EST: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAG AAGTTGCTTTCTCTGGATGATGACGAAGAAGATTCAGATGANNNNNEST: gi|7162479|gb|AW520101.1|AW520101
genomic: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAGgtaattcacc ... taacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
EST: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAG AAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGANNNNN
genomic: ATCATCTTTTGGTCAACGATGACCTTGAGACATGCTATGAGAATTTGAAGgtaattcacc ... taacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
aatacttcaattatgacattaatcttttctaaataattgttgttgtaacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
ttgtaac putative branch site (score: 2)
aattatgacattaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcacccagatcattggctaccttgcctggattgtttcaacgcaatacttcaattatgacattaatcttttctaaataattgttgttgtaacctacagAAGTTGCTTTCTCTGGATGATGACCAAGAAGATTCAGATGATTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG