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gtaataataactggagctagcgtttcagacagctagcacacaacatacatgcagagagagcgctcagataaattggtgtaccaaaattcgcaagctctttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGACCGCCAAGTGCAAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACA
species | Zea mays |
transcript | GRMZM2G084440_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAG GTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTEST: gi|78108949|gb|DV527366.1|DV527366
genomic: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAGgtaataataa ... tttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCT
EST: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGC-AGAATGCAAG GTCGAGTTTGATGEST: gi|6994060|gb|AW453274.1|AW453274
genomic: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAGgtaataataa ... tttgctgcagGTCGAGTTTGATG
EST: TGAGCGCTG-TTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAG GTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGEST: gi|78093304|gb|DV521678.1|DV521678
genomic: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAGgtaataataa ... tttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAG
EST: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAG GTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTC
genomic: TGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAGgtaataataa ... tttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTC
agagagagcgctcagataaattggtgtaccaaaattcgcaagctctttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGACCGCCAAGTGCAAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACA
ctctttgct CT-rich tract
agataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataactggagctagcgtttcagacagctagcacacaacatacatgcagagagagcgctcagataaattggtgtaccaaaattcgcaagctctttgctgcagGTCGAGTTTGATGAGAGTGGAAAAGCGTATGGAGTCACTTCTGAAGGGGAGACCGCCAAGTGCAAGAAGATCGTCTGCGATCCTTCGTATTTGCCAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG