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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatgtatggattactaaagctatttatactcttaacatttgaattgggttgtgatgacatttttttttctctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAGGTATATTTGATTCCGATAGTGGTGATGAGAATAACTCGAAGTTGTTGGT

Basic information

species Zea mays
transcript GRMZM2G082573_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50327337|gb|CO522463.1|CO522463
EST:     AATAAGTTCTTCCGCTGCTTCAAATTCAGTTTTGCCAACTGTTGGAAAAG                         TTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAG
genomic: AATAAGTTCTTCCGCTGCTTCAAATTCAGTTTTGCCAACTGTTGGAAAAGgtgattatgt ... ctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAG
EST: gi|166432035|gb|EG103955.1|EG103955
EST:     CTGTTGGAAAAG                         TTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAG
genomic: CTGTTGGAAAAGgtgattatgt ... ctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactcttaacatttgaattgggttgtgatgacatttttttttctctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAGGTATATTTGATTCCGATAGTGGTGATGAGAATAACTCGAAGTTGTTGGT
    tcttaac  putative branch site (score: 2)
                                catttttttttctcta  putative PPT
                            atgacattttttttt  TA-rich tract