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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcctccaactattctgcaattcaacagatttatggtgacatttttattttaatttcattgttgtctatgtccagCGGAAATGTTGGTGCAAGGCTGTCTGTTGATGCTTCAAATATACGACGCCTTGTAGGCGATTCATTGGCATTGATGGTTCGAAGCACGGTTACAGTTATT

Basic information

species Zea mays
transcript GRMZM2G082385_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g47490.1 (Oryza sativa), 3'ss of exon 9
gtcagcctccaactattctgcaatt-----------caacagatttatggtgacatttttatt-------ttaatttcattgttgtct-atgtccagCGGAAATGTTGGTGCAAGGCTGTCTGTTGATGCTTCAAATATACGACGCCTTGTAGGCGATTCATTGGCATTGATGGTTCGAAGCACGGTTACAGTTATT
||||| ||| || |||||  |  ||              ||||||||   | | || |  | |       ||| || | ||  ||| | ||| |||| ||||   ||||||| ||||| |||||||||||||||||||| || || |||||||| || || || || ||||| ||||||||| | |||||| |||||
gtcagtctctaattattccacggttgtgcattacattcccagatttaccattaaatctgcactgcgttatttacttcctttactgttttatgcccagTGGAACAATTGGTGCGAGGCTATCTGTTGATGCTTCAAATATTCGGCGTCTTGTAGGAGACTCGTTAGCGTTGATTGTTCGAAGCTCTGTTACAATTATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaacagatttatggtgacatttttattttaatttcattgttgtctatgtccagCGGAAATGTTGGTGCAAGGCTGTCTGTTGATGCTTCAAATATACGACGCCTTGTAGGCGATTCATTGGCATTGATGGTTCGAAGCACGGTTACAGTTATT
                           ttttaat  putative branch site (score: 3)
                    atttttattttaattt  TA-rich tract