Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcttatttcttttaccagcatctttccacagaatgaattgttagttaccaccaataaatctattaaacatttggatttcttggtgactcagCTTGATGACGCATTGAGCGCAACCAGGCTTCCTGATGGTAGAATAAAGGTCTGGATACATGTTGCTGACCCAACATGCTTGGTCAAACCTCATAGCATCA

Basic information

species Zea mays
transcript GRMZM2G082260_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082260_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g62440.2 (Oryza sativa), 3'ss of exon 8
gtacattcttatttcttttacca--gcatctttccacaga--------atgaattgttagtta---ccaccaataaatctattaaacatttggatttcttggtgactcagCTTGATGACGCATTGAGCGCAACCAGGCTTCCTGATGGTAGAATAAAGGTCTGGATACATGTTGCTGACCCAACATGCTTGGTCAAACCTCATAGCATCA
| |  ||  | || ||| | |||  |||||| |||  |||        || | ||   || |    | ||  | | ||| |||||||| ||   ||| |||||||||||||||||||| ||| | || ||  | ||  | ||||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||| |  |||||||
gcatgtttctgttccttctgccattgcatctatcccaagagactggttataatttagcagctgtgcctactgacagatccattaaacactt---ttttttggtgactcagCTTGATGATGCACTAAGTGCTGCTAGATTACCTGATGGTAGGATAAAGGTCTGGATACATGTTGCTGACCCAACAAGCTTGGTTCAACCCCGGAGCATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttagttaccaccaataaatctattaaacatttggatttcttggtgactcagCTTGATGACGCATTGAGCGCAACCAGGCTTCCTGATGGTAGAATAAAGGTCTGGATACATGTTGCTGACCCAACATGCTTGGTCAAACCTCATAGCATCA
                                       tttcttg  CT-rich tract
                aataaatctattaaac  TA-rich tract