1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacacctctttcacagacgaagttcgttaatccttccatacctcgtatcattctttgttgggaagttcacttgtgttgacatcaactttataactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACTAGCAGGAGAGGAGGTCGAGGTGCTTTCATGTAGCTCACCGGCCGTGAT
species | Zea mays |
transcript | GRMZM2G080652_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|32837961|gb|CD977639.1|CD977639
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|71309452|gb|DR791013.1|DR791013
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|24768059|gb|CA403191.1|CA403191
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|78117500|gb|DV535887.1|DV535887
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|71330843|gb|DR802223.1|DR802223
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACEST: gi|18169407|gb|BM339247.1|BM339247
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
EST: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAG CACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
genomic: AACGACACTCTCCTCATGACCTACCTTGCAATGGTCACTAAATGTTCAAGgtacacctct ... taactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGAC
tatcattctttgttgggaagttcacttgtgttgacatcaactttataactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACTAGCAGGAGAGGAGGTCGAGGTGCTTTCATGTAGCTCACCGGCCGTGAT
ttataac putative branch site (score: 46)
aactttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacctctttcacagacgaagttcgttaatccttccatacctcgtatcattctttgttgggaagttcacttgtgttgacatcaactttataactcgcagCACAATGAACGAGTTGGTCGAGAAGATAAACACGAGCTATGAGAGAACGACTAGCAGGAGAGGAGGTCGAGGTGCTTTCATGTAGCTCACCGGCCGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA