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gtaaggccgatactatccatttacagagttcagatgctgttgaaggatatgcacatattttaccatgatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT
species | Zea mays |
transcript | GRMZM2G079538_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTTGCAAACCGTCTTAAGGATTCEST: gi|148943959|gb|EC889039.2|EC889039
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATT-GCAAACCGTCTTAAGGATTC
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCCCATGCCA-GGCTCEST: gi|211169880|gb|FL077609.1|FL077609
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCA-ATGCCAAGGCTC
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|31355469|gb|CD439826.1|CD439826
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCANGAAGCGTATTGCAAACCGTCTTAAAGATTCTEST: gi|31355590|gb|CD439947.1|CD439947
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|5343075|gb|AI795485.1|AI795485
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCEST: gi|13558100|gb|BG549456.1|BG549456
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCC
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|78103875|gb|DV522298.1|DV522298
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAACCGTATTGCAAACCGTCTTAAEST: gi|148958216|gb|EC904424.2|EC904424
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAA
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTEST: gi|148991485|gb|EE033000.2|EE033000
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTT
EST: AACATCCCCTTCAGAACCACAGCTCCCCTCCAAA-GAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|211169873|gb|FL077602.1|FL077602
genomic: AACATCCCCTTCAGAACCACAGCTCCC-TCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|149081048|gb|EE170148.2|EE170148
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|148931436|gb|EC874404.2|EC874404
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AACATCCCCTTCAGAACCACAGCTCCCCTCCAAA-GAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATEST: gi|32801408|gb|CD953644.1|CD953644
genomic: AACATCCCCTTCAGAACCACAGCTCCC-TCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTAT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAEST: gi|149014456|gb|EE044070.2|EE044070
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTA
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCAAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|149003557|gb|EE038930.2|EE038930
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCCAGGCTCANGAAGCGTATTGCAAACCEST: gi|32801064|gb|CD953300.1|CD953300
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACC
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAEST: gi|7145229|gb|AW506710.1|AW506710
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTA
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|31353408|gb|CD437765.1|CD437765
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|13558537|gb|BG549893.1|BG549893
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGG GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTEST: gi|67033243|gb|CO461992.1|CO461992
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCT
EST: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGCCGG GTGGCCA-TGNCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGGAT-
genomic: AAACATCCCCTTCAGAACCACAGCTCCCTCCAAAAGAACGAGAGCGGCGGgtaaggccga ... gatattgcagGTG-CCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGG-ATT
tacagagttcagatgctgttgaaggatatgcacatattttaccatgatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT
acatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggccgatactatccatttacagagttcagatgctgttgaaggatatgcacatattttaccatgatattgcagGTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG