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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaataacagtgtctatttgtttatttttgttatatgtcctttatatctgataaatcagtagtgcattagtccagctaacacttagtgttcttgtaacagGTATCACCAAGTTGACAGTGACGACTTAACAATAGCAGTTAACTTTTGGTGGAAGTCAAGAATAATGACTCAAATGTTAGAACATATGGATGCCTACTAT

Basic information

species Zea mays
transcript GRMZM2G079468_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079468_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g56640.3 (Oryza sativa), 3'ss of exon 8
tgaataacagtgtctatttgtttatttttgttatatgtcctttatatctgataaatcagtagtgca-ttagtccagctaacactt--agtgttcttgtaacagGTATCACCAAGTTGACAGTGACGACTTAACAATAGCAGTTAACTTTTGGTGGAAGTCAAGAATAATGACTCAAATGTTAGAACATATGGATGCCTACTAT
||  |       |  |||| |||  || | | |  |||| | |  |    |  || ||||||   | ||| |   ||||||||||  || |||  | |||||||||||| |||||||||||||| || || ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
tgctttgtttcttaaattttttt-cttctatcaactgtcatctcgaa--aaccaaacagtaggaaaattaatatggctaacactttaagggtttatttaacagGTATCATCAAGTTGACAGTGATGATTTGACAATAGCAATTAACTTTTGGTGGAAGTCAAGAATAATGAATGAAATGTTAGAACATATGGATGCCTACTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772397|gb|DR970332.1|DR970332
EST:     GAAACAGTAATTCTAAACTGCAGCGATGTTGTTTTCATACCAGAAGGCTG                         GTATCACCAAGT-GACAGTGACGACTTA
genomic: GAAACAGTAATTCTAAACTGCAGCGATGTTGTTTTCATACCAGAAGGCTGgtacatttct ... cttgtaacagGTATCACCAAGTTGACAGTGACGACTTA
EST: gi|76289273|gb|DV028841.1|DV028841
EST:     GAAACAGTAATTCTAAACTGCAGCGATGTTGTTTTCATACCAGAAGGCTG                         GTATCACCAAGTTGACAGTGACGACTTTAACA-TAGCAGTTAACTTTTGGT
genomic: GAAACAGTAATTCTAAACTGCAGCGATGTTGTTTTCATACCAGAAGGCTGgtacatttct ... cttgtaacagGTATCACCAAGTTGACAGTGACGACTT-AACAATAGCAGTTAACTTTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgataaatcagtagtgcattagtccagctaacacttagtgttcttgtaacagGTATCACCAAGTTGACAGTGACGACTTAACAATAGCAGTTAACTTTTGGTGGAAGTCAAGAATAATGACTCAAATGTTAGAACATATGGATGCCTACTAT
                            agctaac  putative branch site (score: 2)
                                         tgttctt  putative PPT
     ataaatca  TA-rich tract