1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagacaatttatgatccccgcataaatatggtagcttgatttccctcccaccctgaaaattctaatgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG
species | Zea mays |
transcript | GRMZM2G079196_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAGAGGCCAAGCC GTACAAG-ATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211507840|gb|FL110003.1|FL110003
genomic: TGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|67023333|gb|CO452082.1|CO452082
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAATTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211507839|gb|FL110002.1|FL110002
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211507837|gb|FL110000.1|FL110000
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|74246199|gb|DT654113.1|DT654113
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: AAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|18659527|gb|BM500385.1|BM500385
genomic: AAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|83279086|gb|DV943094.1|DV943094
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGACCCTGAAATTCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211507835|gb|FL109998.1|FL109998
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211450033|gb|FL052875.1|FL052875
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: GAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|45847141|gb|CN071084.1|CN071084
genomic: GAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTAEST: gi|211507838|gb|FL110001.1|FL110001
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
EST: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCC GTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
genomic: ATGTTGATGGAATCTGAAGTGAATCCTTTTGATGGACAAGAGGCCAAGCCgtaagacaat ... atgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTA
gcataaatatggtagcttgatttccctcccaccctgaaaattctaatgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG
ttctaat putative branch site (score: 165)
aaaattctaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaatttatgatccccgcataaatatggtagcttgatttccctcccaccctgaaaattctaatgtttgcagGTACAAGAATGATCCTGAAATCCTTGCAATGACAAACCTGATTGCAGCGTACCAGAAGAATGACATCATGGAATTTGAAAAGATCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG