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...tatagtctataatagaaagttttcatacatagtacttctgccttggagttggaaacaaaaagacatttgttgcttagacaatgattccctgtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTGGTAATGCTCTCCGCATAGTCGAAGAAGGCGGGGTTCCTGTTCTTGTAA
species | Zea mays |
transcript | GRMZM2G079031_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGEST: gi|31356620|gb|CD440977.1|CD440977
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGG
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTEST: gi|87156811|gb|DY401600.1|DY401600
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTEST: gi|31354799|gb|CD439156.1|CD439156
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTEST: gi|23357711|gb|BU645360.1|BU645360
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATEST: gi|74235479|gb|DT643393.1|DT643393
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCAT
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTEST: gi|50329592|gb|CO524718.1|CO524718
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
EST: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA GATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
genomic: AGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAAgtaagttctg ... gtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCT
gagttggaaacaaaaagacatttgttgcttagacaatgattccctgtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTGGTAATGCTCTCCGCATAGTCGAAGAAGGCGGGGTTCCTGTTCTTGTAA
ttccctgtttccac CT-rich tract
aaacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagtctataatagaaagttttcatacatagtacttctgccttggagttggaaacaaaaagacatttgttgcttagacaatgattccctgtttccacagGATGTTCACGAGACAGCTGCAGGGGCACTATGGAATCTTGCATTTTATTCTGGTAATGCTCTCCGCATAGTCGAAGAAGGCGGGGTTCCTGTTCTTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - aatagaaa
- - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct