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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggttctatatttaattcatcaactacagtctgacaaagtattgcctgtttgacattcctgtggttatatctgcatggaatcacataaattgtaaaaaaaacatttatgatgtatctgttagtctagcatcactctttccctgttataagttagtttgattgtactcactagATGTAAAGGCACTGGCAACATGGGAAGTTGATTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTG

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 8
gtaagggttctatatttaattcatcaactacagtctgacaaagtattgcctgtttgacattcctgtggttatatctgcatggaatcacataaattgtaaaaaaaacatttatgat--gtatctgttagtctagcatcactctttccctgttataagttagtttgattgtactcactagATGTAAAGGCACTGGCAACATGGGAAGTTGATTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTG
                                                                           |||| ||| | |||||||    ||       | | |  ||   ||    ||     | |||     ||||  | ||| |   ||| |  ||  || |    |||||||||||| |||||||||||||||||||||||  ||||| ||| ||| |||  |||| |||||||||||||  | || |
--------------------------------------------------------------------------ttgcaaggatttacataaaaaa-aattgttgtactgaaaataaatactcattgaaaaaacatgttattttcagtcttaca---taggtatatcatatttttcagATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGGATGTCCTTCTTCAATGTACCTTGTACTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298470|gb|DR785213.1|DR785213
EST:     GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCTATCATA                         ATGTAAAGGCACTGGGCA-CATGGGAAAGT-GATTCTGTGGGAAATGCTAC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGG-CAACATGGGAA-GTTGATTCTGTGGGAAATGCTAC
EST: gi|78108131|gb|DV526549.1|DV526549
EST:     GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATA                         ATGTAAAGGCACTGGCAACATGGGAAAGT-GATTCTGTGGGAAATGCTACC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGGCAACATGGGAA-GTTGATTCTGTGGGAAATGCTACC
EST: gi|148973503|gb|EE024603.2|EE024603
EST:     GTCAATTTGGGGTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATA                         ATGTAAAGGCACTGGCAACATGGGAAAGT-GATTCTGTGGGAAATGCTACC
genomic: GTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATTTCTGCAATCATAgtaagggttc ... tactcactagATGTAAAGGCACTGGCAACATGGGAA-GTTGATTCTGTGGGAAATGCTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagtctagcatcactctttccctgttataagttagtttgattgtactcactagATGTAAAGGCACTGGCAACATGGGAAGTTGATTCTGTGGGAAATGCTACCGGAATTCCTGCTTCAATGTACCTCTTGCTTG
                                    gtttgat  putative branch site (score: 5)
                          ttataagttagttt  TA-rich tract