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gtgccagtttatactgcttctgttcgagctttccttccctgttggtgtcctcactgacaacaattaactctgaaatctacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
species | Zea mays |
transcript | GRMZM2G077299_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATTTCTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATGEST: gi|6095297|gb|AW119964.1|AW119964
genomic: GAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
EST: ATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATGEST: gi|211082959|gb|FL420012.1|FL420012
genomic: ATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
EST: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTNTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATGEST: gi|78179997|gb|DV550370.1|DV550370
genomic: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
EST: TTTGGAATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATGEST: gi|211043015|gb|FL421679.1|FL421679
genomic: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
EST: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATGEST: gi|71441725|gb|DR822775.1|DR822775
genomic: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
EST: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAG CTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
genomic: TTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagttt ... tacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
ccttccctgttggtgtcctcactgacaacaattaactctgaaatctacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
aattaac putative branch site (score: 2)
aacaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccagtttatactgcttctgttcgagctttccttccctgttggtgtcctcactgacaacaattaactctgaaatctacatcaaagCTTGCGGAGGACCTGGGTACTGAACCAATCTGGGTATTCAACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA