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gttagctcaacatatgaattaatttctaagttcttccatagcccgtaatatctatgcatttttattttccatgacatgcttttttattgaactatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTCTGTACTGCTTGTGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGT
species | Zea mays |
transcript | GRMZM2G077233_T05 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|12047192|gb|BF729331.1|BF729331
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|76291014|gb|DV030582.1|DV030582
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|60348336|gb|DN215309.1|DN215309
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|60396697|gb|DN229564.1|DN229564
genomic: GTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: ATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|8577168|gb|BE129805.1|BE129805
genomic: ATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|211384116|gb|FL248479.1|FL248479
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: CTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|60346328|gb|DN213301.1|DN213301
genomic: CTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|91876412|gb|EB406369.1|EB406369
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: TTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|83278626|gb|DV942634.1|DV942634
genomic: TTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATAGAATCTGTTG-TGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|6194440|gb|AW146544.1|AW146544
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: TGGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTEST: gi|32858947|gb|CD998628.1|CD998628
genomic: TG-TGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
EST: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAG CAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
genomic: GTGTGCACTCAGATTGGTCTCTGTGTATTTGATGGTGCCCATTCTGTCAGgttagctcaa ... tatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTT
atatctatgcatttttattttccatgacatgcttttttattgaactatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTCTGTACTGCTTGTGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGT
tatgcatttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagctcaacatatgaattaatttctaagttcttccatagcccgtaatatctatgcatttttattttccatgacatgcttttttattgaactatcatgcagCAATCCAATTGAATCTGTTGTTGAGAAACAGAAGCGTGGTTCTGATCTTTTCTGTACTGCTTGTGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC