Sequence
atgc intronic sequence ATGC exonic sequence...aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 3'ss of exon 9
aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatatacat---gcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
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-ttgtgtttttatgaatttatttcctttttatcattgcatccg-tagcacttttatt-ctcatctgttaacacttgtttttttttcttttgtatattttgcagATTGCCACTGATGTCGCATCCCGTGGACTTGATATTCCAGATGTCGAAGTTGTCATTAACTATAGCTATCCTTTGACTACAGAGGATTATGTCCACAGGA
upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G01390.1 (Glycine max), 3'ss of exon 10
aacatcattctgtcaagttctcttat--ttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatata-catgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
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--ctgtactgggtaaagtacgaatgacatgatccctcaaacattctgcacacttttgttgttttattcagt-catatatttgacttaacaattcaatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAA
upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA09G34390.1 (Glycine max), 3'ss of exon 10
--aacatcattctgt-caagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcactcattattttttgtaatata-catgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
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tatagtggatacagtacgaatgacattatctgt-tagacattctgcacact--ttctgttgttttactcagt-catatatttgacttaaaaattcaatgagcagATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAA
upper sequence: GRMZM2G076484_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv02s0109g00380.t01 (Vitis vinifera), 3'ss of exon 12
aacatcattctgtcaagttctcttatttatgtttctagtttagacgacaatgctattgtttgtttcattgcact-cattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
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aattaaaatgttctaagatcact-gctggttattatattttgagtccttgcaagagtggaaattgcaaagtatgacatttatttgctttatgtttgtgcagATAGCTACAGATGTGGCTGCACGAGGATTGGATATTCCAGATGTGGAAGTAGTGATCAACTACAGTTTTCCTCTCACTACAGAGGATTATGTTCACAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78090951|gb|DV519325.1|DV519325EST: CAAAAGCTTTATCTTTATTTAAAGAAGGGAAATGCCCATTAATG ATTGCTGCGGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTA
genomic: CAAAAGCTTTATCTTTATTTAAAGAAGGGAAATGCCCATTAATGgtgtgttttt ... atacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacaatgctattgtttgtttcattgcactcattattttttgtaatatacatgcagATTGCTACAGATGTCGCTTCACGTGGACTTGATATTCCTGATGTTGAAGTAGTGATTAACTATAGTTATCCTTTGACCACTGAGGACTACGTCCACAGGA
tcattattttttgtaa TA-rich tract