1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgaactatgtttcttaattagtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
species | Zea mays |
transcript | GRMZM2G075153_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|149094738|gb|EE180294.2|EE180294
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTTTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|67012102|gb|CO440851.1|CO440851
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|60395696|gb|DN228566.1|DN228566
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|4804475|gb|AI665345.2|AI665345
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACCCTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|9825106|gb|BE575308.1|BE575308
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: GAACGACACTGCTCTTCGGATGGCCCANG-TTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|88750228|gb|DY534369.1|DY534369
genomic: GAACGACACTGCTCTTCGGATGGCCCA-GTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: GTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|211303407|gb|FL181618.1|FL181618
genomic: GTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|71419167|gb|DR804675.1|DR804675
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|61119178|gb|DN560139.1|DN560139
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTTGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|67012003|gb|CO440752.1|CO440752
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|211484408|gb|FL480088.1|FL480088
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|60398293|gb|DN231109.1|DN231109
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|78122335|gb|DV540719.1|DV540719
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTTTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|13515896|gb|BG518172.1|BG518172
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|4647443|gb|AI622518.1|AI622518
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|76291941|gb|DV031509.1|DV031509
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|60355129|gb|DN222102.1|DN222102
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|29946122|gb|CB815990.1|CB815990
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|60352254|gb|DN219227.1|DN219227
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|74245809|gb|DT653723.1|DT653723
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|71763831|gb|DR961768.1|DR961768
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|60397682|gb|DN230498.1|DN230498
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|47962545|gb|CN845254.1|CN845254
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|213192843|gb|FM182914.1|FM182914
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|32914041|gb|CF018853.1|CF018853
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTEST: gi|30705989|gb|CD058994.1|CD058994
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
EST: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAG ATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
genomic: AGAACGACACTGCTCTTCGGATGGCCCAGTTTTTAGAGGAGCATCCAAAGgtgtgaacta ... ttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATT
agtggcattccatgtttcaattgttttagctaatgatgttatctcttgttcccagATTGCTCGTGTCTACTATCCTGGCTTGCCAAGTCACCCTGAACATCACATTGCCAAGAGTCAAATGACTGGCTTTGGCGGTGTTGTTAGTTTTGAG
agctaat putative branch site (score: 3)
ttatctcttgttccc putative PPT
tttcaattgtttta TA-rich tract