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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatgatggactagctcattcctcaaaccaaacaccctattactctcttttttggttcacttcttcattttaaactttttatgacctatgcaaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTTGGAATGAGTAGCCCG

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g33460.1 (Oryza sativa), 3'ss of exon 8
---------------------------------------------------------------agatgatggactagctcattcctcaaaccaa-acaccctattactctcttttttggttcac-----ttcttcattttaaacttttt---------------atgacctatgcaaaa-tgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTTGGAATGAGTAGCCCG
                                                                 ||| | |  |  || |  ||| | |  |        || |||| | ||| || ||| |      |  | |||||||| |||| |                |    ||| |  || ||||||| |||||||||||| |||| ||||||||||| || || || || ||||||||||||||||||||| |||||||||||||||||
gtatgtttctaccttacagtctttccacgaaatatttttcccttgcattttttttaaaaaaatctatgctcgtgtcactaaaaccttatagaactgtgtaatactactttttttctttgttgatcaggatattccattttaacctttattttccatctcctaatgttgtttatacgcaactgcagGAAAAATATGTATTCCAACATCCTCAACCTAAACGACCAAATTCGCTGCGGATATATGAATCACATATTGGAATGAGTAGCCCG

upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 8
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 8
-agatgatggactagctcattcctcaaaccaaacaccctattactctcttttttggttcacttcttcattttaaactttttatgacctatgcaaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTTGGAATGAGTAGCCCG
 |  || |   |    | ||   |      |       |  ||      | | |   |   | | ||  |  |  | |   | |  ||        | ||||| |||||||  |||||||| ||||  || |||   ||||  || ||||| |||||||||||||||||||||||||||||  ||
taactggtatccagcattatctatgggtatatgtggtttcatatatatatatatatatatatccctcgctgaaggcctaaaaagtactccattgt-ttcagGATAAATATGCGTTCAAACATCCTCGTCCAAAGAAACCCACATCGCTGCGTATATATGAATCACATGTTGGAATGAGTAGTACG

upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 8
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------------------------------------------------------------------------agatga-tggactagctcattcctcaaaccaaacaccctat-tactctcttttttggttcacttcttcattttaaactttttatgacct-------atgcaaaatgc------agGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTTGGAATGAGTAGCCCG
                                                                               ||||   | ||  || |   ||    ||    |     ||| | ||  |  |||    | |   | |||   || ||||||  |  ||         | | ||||        ||||||| |||||||||||||| |||||||| ||| | || ||||| ||  |||| |||||| |||||||||| ||||||||| ||
gtaaggctctacagtcttttgaataattatcttgtggaaaacaattgtgccagtgctagtctgaaatttttgaagatttagatttctcgataagttttctcagtcaattccatttaatatatgcttacaatttaatataaaaacatcaacatatacttttgcttgcccttcaacggttccaaatttctttttagGAGAAGTATGTATTCAAACATCCTCAACCAAAGAGACCTAAGTCGCTAAGGATTTATGAAGCACATGTTGGCATGAGTAGCACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22472538|gb|BU037018.1|BU037018
EST:     CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAG                         GAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
genomic: CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGgtatgctcaa ... caaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
EST: gi|211263679|gb|FL032932.1|FL032932
EST:     CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAG                         GAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCAAAGTCACTGNGG
genomic: CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGgtatgctcaa ... caaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
EST: gi|87155797|gb|DY400586.1|DY400586
EST:     CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAG                         GAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
genomic: CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGgtatgctcaa ... caaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
EST: gi|26558524|gb|CA830759.1|CA830759
EST:     CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAG                         GAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
genomic: CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGgtatgctcaa ... caaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
EST: gi|67022129|gb|CO450878.1|CO450878
EST:     CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAG                         GAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG
genomic: CTCCAGGTGAAATACCATACAACGGTATATATTATGACCCACCTGAAGAGgtatgctcaa ... caaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttttggttcacttcttcattttaaactttttatgacctatgcaaaatgcagGAGAAATATGTATTCAAACACCCTCAACCTAAGCGGCCCAAGTCACTGCGGATATATGAATCACATGTTGGAATGAGTAGCCCG
               ttcttcattttaaact  TA-rich tract