1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagttttctattcttttatgcttatgcggttcagataactgtcagcacctcagtcatttatttctgcttgcagCGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAAAACAGACTTTCTCGAATGTTGGAACACAAG
species | Zea mays |
transcript | GRMZM2G070487_T04 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAAACGTCTTCAGGAAGAGAAGATCCTTCACGAGCAAGAGCAGCTT CGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAAEST: gi|6564167|gb|AW231789.1|AW231789
genomic: TCCAAAAACGTCTTCAGGAAGAGAAGATCCTTCACGAGCAAGAGCAGCTTgtcagttttc ... ctgcttgcagCGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAA
EST: TCCAAAAACGTCTTCAGGAAGAGAAGATCCTTCACGAGCAAGAGCAGCTT CGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAG
genomic: TCCAAAAACGTCTTCAGGAAGAGAAGATCCTTCACGAGCAAGAGCAGCTTgtcagttttc ... ctgcttgcagCGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAA
tgcttatgcggttcagataactgtcagcacctcagtcatttatttctgcttgcagCGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAAAACAGACTTTCTCGAATGTTGGAACACAAG
agataac putative branch site (score: 3)
tttatttct putative PPT
tcatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttttctattcttttatgcttatgcggttcagataactgtcagcacctcagtcatttatttctgcttgcagCGGGAGATTGAACTCAGCAAACAACACCATGCTGGCGACTTGCAAGAGAAAAACAGACTTTCTCGAATGTTGGAACACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA