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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttacgacctcttcatttatccttcaatagagaaaatgtgttctgaaacgcaacttgttaacctttatgttgacactttcgcgaatttcaatattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG

Basic information

species Zea mays
transcript GRMZM2G070422_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 3'ss of exon 8
ttacgacctcttcatttatccttcaatagagaaaatgtgttctgaaacgcaacttgt--taacctttat-------gttgacactttcgcgaat---ttcaatattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG
           | ||  |         ||| | ||  |||| |||  | |||| | |  |||||| ||         ||| ||||  | |  ||   || |||||||  |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||
-----------ttatccaattgcattaagaaataacttgttatgacgctcaacctatactaacctatactattttcattggcactgcctcatatatgtttaatatttc-cagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015153|gb|CO443902.1|CO443902
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|211267877|gb|FL003942.1|FL003942
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|211267881|gb|FL003946.1|FL003946
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|32914780|gb|CF019592.1|CF019592
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAA
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAA
EST: gi|67017641|gb|CO446390.1|CO446390
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTTACATACATTGCATCTGAAAAGGCG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCG
EST: gi|31364152|gb|CD448507.1|CD448507
EST:     CTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: CTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31357208|gb|CD441565.1|CD441565
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|24768563|gb|CA403692.1|CA403692
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|32907864|gb|CF012677.1|CF012677
EST:     ATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: ATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31362224|gb|CD446581.1|CD446581
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|67042246|gb|CO468501.1|CO468501
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31356384|gb|CD440741.1|CD440741
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTC
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTC
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|9952049|gb|BE638632.1|BE638632
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|6526869|gb|AW216132.1|AW216132
EST:     NTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|9254230|gb|BE344698.1|BE344698
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31355683|gb|CD440040.1|CD440040
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31361470|gb|CD445827.1|CD445827
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAA
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAA
EST: gi|67018992|gb|CO447741.1|CO447741
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATNATGAATCCCC                         GTGGTGCTAGCATCTCTCTTACATACATTGCATCTGAA-GGGCG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCG
EST: gi|31364652|gb|CD449007.1|CD449007
EST:     ATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: ATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|211497962|gb|FL450082.1|FL450082
EST:     TTCAGCACTTCCTTCCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTCAGCACTTCCTT-CCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|211375763|gb|FL457930.1|FL457930
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|71766308|gb|DR964245.1|DR964245
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|67019739|gb|CO448488.1|CO448488
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|60399474|gb|DN232286.1|DN232286
EST:     GCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: GCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|67022814|gb|CO451563.1|CO451563
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|13150169|gb|BG320491.1|BG320491
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|211497961|gb|FL450081.1|FL450081
EST:     TTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|7162427|gb|AW520049.1|AW520049
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCN                         NNNNNNCTAGCATCTCTCTAACATACATTGCAT
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCAT
EST: gi|111990916|gb|EE332354.1|EE332354
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|71766309|gb|DR964246.1|DR964246
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCTCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGG
EST: gi|29544932|gb|CB605540.1|CB605540
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|31354494|gb|CD438851.1|CD438851
EST:     TACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTG
genomic: TACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCC-Ggtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTG
EST: gi|32908050|gb|CF012863.1|CF012863
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCGTCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|32907865|gb|CF012678.1|CF012678
EST:     TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
EST: gi|6564253|gb|AW231875.1|AW231875
EST:     TTACTCCTATG-TTCATTGCTTCAGC-CTTCCTTCCTATAATGAATCCCG                         GTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG
genomic: TTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcata ... tattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgcaacttgttaacctttatgttgacactttcgcgaatttcaatattttacagGTGGTGCTAGCATCTCTCTAACATACATTGCATCTGAAAGGGCGATTCCTGG
                                     aatttcaatattttac  TA-rich tract