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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattggctttttttcattcctgctagatgtagcaatgtgtgttgacgccagttaccttcagataattgttccatcgtgcaaagttcacatgcaacttcgtttagtggttagatcttttttctgtgatgaattttattttcttagttcctctttctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG

Basic information

species Zea mays
transcript GRMZM2G070113_T04
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 3'ss of exon 9
gtaatattggctttttttcattcctgct-agatgtagcaatgtg--------tgttgacgccagttaccttcagataattgttccatcgtgcaaagttcaca------tgcaacttcgtttagtggttagatcttttttctgtgatgaattttattttcttagttcctcttt-----------ctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG
|||| |||  | | |  || ||  | || | |  |  || | |         |||   |  || | |  || ||  | |||| |   | |  |||  | | |      |  ||||||  ||      |    |||| || ||   |   ||| ||  ||||  | |||  |            ||||   ||| ||||||||||| |||||||| ||||||||||| || || ||||||||||||
gtaaaattaacctctcatccttagtacttacaaatgacattattggacaatttgtaagcatcaataatttttagggagttgtacttgcctttaaaagttatagtacaattaaacttcagttcacaactcctcctttcttttgacttttttttaatcatcttgttgccttctctcaattgtatcctttatacagGGATTTCACAAACCCATCATTGCCTACAGAACAGCGTCCAAGGGCCTCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatcttttttctgtgatgaattttattttcttagttcctctttctttcctcagAGATTTCACAAATCCATCATTACCTACAGAACAACGCCCTAGGGCCTCTCAG
                      ttttattttcttagtt  CT-rich tract
                 atgaattttattttct  TA-rich tract