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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 3'ss of exon 8
gtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
|||||| |  |  |   ||  | || |||||| ||   | |||   |||  | |||||  ||||||| ||| ||       | |||||| || ||||||||||||||||||||||| || || |||||
gtatgacccatgactagtcttagttgaaatttattt--atttttctcaatcttatttt--cttgtttccttgtat------ttcagTCTAAGCGAACTGCAAGTCCATTACAACAATGATCGTTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016395|gb|CO445144.1|CO445144
EST:     GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|31628085|gb|CD526434.1|CD526434
EST:     GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|30031872|gb|CB833723.1|CB833723
EST:     CAAGGAACATATATGATGGTTGNCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: -AAGGAACATATATGATGGTTG-CTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|61118021|gb|DN558982.1|DN558982
EST:     GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     GGAAGGAACATATACGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|33093651|gb|CF053645.1|CF053645
EST:     GCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|71436418|gb|DR817468.1|DR817468
EST:     GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|76011812|gb|DT938982.1|DT938982
EST:     GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
EST: gi|32915229|gb|CF020041.1|CF020041
EST:     GGAAGGAACATATACGATGGTTGCTGCCAGCTAGATATTCAATATTCAAA                         TCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
genomic: GGAAGGAACATATATGATGGTTGCTGCCAGCTAGATATTCAATATTCAAAgtatgagctg ... gaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
                       ttttttcttgttttct  CT-rich tract
                aacttaattttttctt  TA-rich tract