1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...catatctcactgtcactggttatattgtatatgacattattactgcaattcacaagcaagtgcctacataattgctaatgattctttgtttattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAA
species | Zea mays |
transcript | GRMZM2G069916_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGACCCACCTTCAGACCCTTCGAAATATACTGCTGTTGATGTTCGAAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTEST: gi|32847638|gb|CD987319.1|CD987319
genomic: AGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCG-AATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGT
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTTGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTAEST: gi|32847430|gb|CD987111.1|CD987111
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTAEST: gi|32832751|gb|CD972429.1|CD972429
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTAEST: gi|32835473|gb|CD975151.1|CD975151
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTAEST: gi|60340812|gb|DN207785.1|DN207785
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTAEST: gi|32834150|gb|CD973828.1|CD973828
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
EST: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATT ACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
genomic: CAGAGCCACCTTCAGACCCTTCGAAATATACTGCTGCTGATGTTCGAATTgtgagtttcc ... tattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTA
caattcacaagcaagtgcctacataattgctaatgattctttgtttattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAA
tgctaat putative branch site (score: 104)
ttctttgtttatttt putative PPT
taatgattctttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatctcactgtcactggttatattgtatatgacattattactgcaattcacaagcaagtgcctacataattgctaatgattctttgtttattttatagACTGATCAAAAATTACGCCTCTGTGACATATGTGGAGCATTTCTGAGTGTATATGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA