1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctgaattgacatatacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCCGGACCACAGAAG
species | Zea mays |
transcript | GRMZM2G069758_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|86471052|gb|DY237422.1|DY237422
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|33096068|gb|CF056062.1|CF056062
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|17931888|gb|BM268848.1|BM268848
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|67022839|gb|CO451588.1|CO451588
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|40303606|gb|CK347993.1|CK347993
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCEST: gi|16922789|gb|BM075781.1|BM075781
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
EST: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAG GATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
genomic: TCAATGCTTACACCTAACCAATTTGAAGTTGAACTACTTACTGGATTGAGgtagccatgc ... atacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGC
attggtagattgatagattgcatgcagcttttcctgaattgacatatacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCCGGACCACAGAAG
aattgac putative branch site (score: 3)
atatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccatgctcttcttttgaaaaagtgaaaaaaggagtcagcataccatacttattgtattggtagattgatagattgcatgcagcttttcctgaattgacatatacttacagGATCACCTCCGAAGAAGATGGTTTGACAGCTTGTAATACCCTCCACAGTGCCGGACCACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG