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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagcttgttgttttcttcatgcaattataataccttttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT

Basic information

species Zea mays
transcript GRMZM2G069676_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069676_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 9
gtaatagcttgttgttttcttcatgcaattataataccttttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT
|||||| ||     ||||||||||||        ||   |   |||  ||  |||||  || | |  ||||||| |||  ||||||| ||||||||||| || |||||||||||||| ||||||||    ||||||||||| ||    ||||||||||||||||| |||||||||||
gtaatatctgcaccttttcttcatgc-----cggtagtctcgtcttgcctgtcattt--tacaaattacatattcagGCATGTTTCCAAATCACATTCCAAATCCTGAGGACAAAACTGCAATGAAAGCCATTACACAAGCTGTGGCCGATAACAAGGCAGACTTGGGCATCATATT

upper sequence: GRMZM2G069676_T03 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA20G32030.1 (Glycine max), 3'ss of exon 8
gtaatagct-tgtt------gttttcttcatgcaattataatacct---tttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT
|||||  || || |        |   ||||      |||   |  |    ||   ||  |    |  |  ||        |||| ||| |||||||| ||||| || || || ||||||||||| || ||||||||   ||| || |||||||| ||||||||||| |  ||  | || || || ||
gtaattactatgcttggaggaatgatttcaactgggtatggcaaatggactttaattctttgagtaacaaatggcttttctattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGTTGATCTTGGAATTATTTT

upper sequence: GRMZM2G069676_T03 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G35490.2 (Glycine max), 3'ss of exon 8
gtaatagct-tgtt------gttttcttcatgcaattataatacct---tttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT
|||||| || || |        ||  || |      |||  ||  |    ||   ||  |    |  |  ||        |||| ||| |||||||| ||||| || || || |||||||||||||| ||||||||   ||| || |||||||| ||||||||||| || ||  | || || || ||
gtaataactatgcttggaggaattatttgaattgggtatggtaaatggactttgattctttgagtaacaaatggctgttgtattcagGCTTGTTTCCAAATCATATCCCAAATCCTGAGGACAAAACAGCAATGAAAGCTATAACCCAAGCAGTCCTTGATAACAAAGCTGATCTTGGAATTATCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933693|gb|CF038505.1|CF038505
EST:     CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG                         GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: gi|60341753|gb|DN208726.1|DN208726
EST:     CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG                         GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: gi|32832812|gb|CD972490.1|CD972490
EST:     CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG                         GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
EST: gi|33094155|gb|CF054149.1|CF054149
EST:     CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATG                         GTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT
genomic: CAAACCATTAGGAGCTGTTACCACTGGAAGTCAATTCCTTGAGCCTGATGgtaatagctt ... acatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaattataataccttttgcttttctcccatttcttatacaccacatatttagGTTTGTTTCCCAATCACATTCCCAACCCTGAGGACAAAACCGCAATGAAGTTTATTACACAAGCAGTTCTTGATAACAAGGCAGACTTAGGCATCATATT
     attataatacctttt  TA-rich tract