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gtcagctttcccgatctccctgaagttaagcatgtgtgttccttcaacctgtactgaagttttggtgattttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACATCGTCACCCGGAGAGCTGCCCGCCTAGCCGCCGCTGGCATTGTTGGGA
species | Zea mays |
transcript | GRMZM2G068913_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG ATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACEST: gi|67032024|gb|CO460773.1|CO460773
genomic: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAGgtcagctttc ... tttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
EST: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG ATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACEST: gi|31909435|gb|CD650917.1|CD650917
genomic: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAGgtcagctttc ... tttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
EST: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG ATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACEST: gi|31909437|gb|CD650918.1|CD650918
genomic: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAGgtcagctttc ... tttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
EST: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG ATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACEST: gi|32939443|gb|CF044262.1|CF044262
genomic: ATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAGgtcagctttc ... tttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
EST: TGCAAGACCATCTGAAG ATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
genomic: TGCAAGACCATCTGAAGgtcagctttc ... tttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGAC
gttaagcatgtgtgttccttcaacctgtactgaagttttggtgattttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACATCGTCACCCGGAGAGCTGCCCGCCTAGCCGCCGCTGGCATTGTTGGGA
ttttgct CT-rich tract
aagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctttcccgatctccctgaagttaagcatgtgtgttccttcaacctgtactgaagttttggtgattttgctgcagATACCGGACACTCCTCTGAAAACTCGGAGGCTAGTCGTCAAAGTCTGCGACATCGTCACCCGGAGAGCTGCCCGCCTAGCCGCCGCTGGCATTGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC