1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcgcttgtcataggattaaacaggaaactttcattattagactttcctgccacaaattttctatggcagcggcatttctcatgagactcgatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGTACTTCATCAAAGGTGGAATTGTCACAGTGATCAAGGATGCTTTACTCCCTA
species | Zea mays |
transcript | GRMZM2G068506_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAGAGCAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAG ATACTCAATGCTGACAATGTTCAAGAAGCTGCAAGGGAGACAGACGGGTEST: gi|32838360|gb|CD978038.1|CD978038
genomic: TCAGGAGAGCAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAGgtattccaaa ... gatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGT
EST: TCAGGAGAACAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAG ATACTCAATGCTGACAATGTTCAAGAAGCTGCAAGGGAGACAGACGGGTEST: gi|32836730|gb|CD976408.1|CD976408
genomic: TCAGGAGAGCAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAGgtattccaaa ... gatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGT
EST: TCAGGAGAGCAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAG ATACTCAATGCTGACAATGTTCAAGAAGCTGCAAGGGAGACAGACGGGTAC
genomic: TCAGGAGAGCAATCATTGACAAGAATGCTCGAATTGGAGACAATGTTAAGgtattccaaa ... gatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGTAC
tcctgccacaaattttctatggcagcggcatttctcatgagactcgatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGTACTTCATCAAAGGTGGAATTGTCACAGTGATCAAGGATGCTTTACTCCCTA
aaattttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgcttgtcataggattaaacaggaaactttcattattagactttcctgccacaaattttctatggcagcggcatttctcatgagactcgatcttgtagATACTCAATGCTGACAATGTTCAAGAAGCTGCAATGGAGACAGACGGGTACTTCATCAAAGGTGGAATTGTCACAGTGATCAAGGATGCTTTACTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG