1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccatactgccatctcaaggaatattccgtctgaaaagaactcatggaacccaatgttccgccagctaactgtttgctctgatgattgttcttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG
species | Zea mays |
transcript | GRMZM2G068277_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAADTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|60400409|gb|DN233216.1|DN233216
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|211359393|gb|FL440514.1|FL440514
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAANTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|71428336|gb|DR809386.1|DR809386
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|60401584|gb|DN234391.1|DN234391
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|71443220|gb|DR824270.1|DR824270
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|76281959|gb|DV021527.1|DV021527
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|78122195|gb|DV540579.1|DV540579
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|50331676|gb|CO526802.1|CO526802
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|110488821|gb|EE012728.1|EE012728
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|45568053|gb|CK985878.1|CK985878
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|148948940|gb|EC894359.2|EC894359
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|110504829|gb|EE017437.1|EE017437
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATTTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|60347346|gb|DN214319.1|DN214319
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|50324448|gb|CO519574.1|CO519574
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|211359065|gb|FL430712.1|FL430712
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAADTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|44900277|gb|CK826822.1|CK826822
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|5915607|gb|AW053248.1|AW053248
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: TTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|211478808|gb|FL379717.1|FL379717
genomic: TTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTEST: gi|74237081|gb|DT644995.1|DT644995
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
EST: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCG GTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
genomic: AGTATCTTGTAGAGGCCACAAAAGAAGCATCCAATTCTTATAATGAAGCGgtaagataca ... ttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATT
gaacccaatgttccgccagctaactgtttgctctgatgattgttcttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG
ttgttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatactgccatctcaaggaatattccgtctgaaaagaactcatggaacccaatgttccgccagctaactgtttgctctgatgattgttcttggtgtcagGTTTCGCGGTTGCGTGAGTACCAGGGTGTAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG
- -tactgcc
- - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgattg