1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatctggctcagtgttgctgccactagtttaccgtatgtttttacttgctaagttgctaaccctggtcgagcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAACCTCACCATGACCACGCAGCTGTTTAAGTCCACATCTGTTGGAGGCCAT
species | Zea mays |
transcript | GRMZM2G068277_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32788560|gb|CD940796.1|CD940796
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|60345943|gb|DN212916.1|DN212916
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|78122195|gb|DV540579.1|DV540579
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|211478808|gb|FL379717.1|FL379717
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|71443220|gb|DR824270.1|DR824270
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32797207|gb|CD949443.1|CD949443
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32802117|gb|CD954353.1|CD954353
genomic: GTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCCACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32796987|gb|CD949223.1|CD949223
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCCCCGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32806979|gb|CD959213.1|CD959213
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCTACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32797216|gb|CD949452.1|CD949452
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCCACGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|211359065|gb|FL430712.1|FL430712
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|32797109|gb|CD949345.1|CD949345
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: GATCCGCGGTTCGATGTGATTGCAAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|50331676|gb|CO526802.1|CO526802
genomic: GATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAAEST: gi|5915607|gb|AW053248.1|AW053248
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
EST: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAG AAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
genomic: TAGATCCACGGTTCGATGTGATTGCGAGGCAGTACCACGAGATTGTAAAGgtaatctggc ... gcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAA
agtttaccgtatgtttttacttgctaagttgctaaccctggtcgagcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAACCTCACCATGACCACGCAGCTGTTTAAGTCCACATCTGTTGGAGGCCAT
tgctaac putative branch site (score: 87)
cttcatc putative PPT
tatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctggctcagtgttgctgccactagtttaccgtatgtttttacttgctaagttgctaaccctggtcgagcttcatcagAAACTGGAGGGCATGCAGTGGACAATTCACCAGGTGGAGATGGACCTGAAACCTCACCATGACCACGCAGCTGTTTAAGTCCACATCTGTTGGAGGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG