Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctagttccttggtcatttcagcaaacatcataatcgtttctactaaatgtgattttttcctgtcctcatcattttcgctttgcacacttcgttttgcttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGACTGTTGTGTTGTTGAACCTTGCTAGTACTACATTAAA

Basic information

species Zea mays
transcript GRMZM2G066496_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066496_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 3'ss of exon 9
gtctagttccttggtcatttcagcaaacatcataatcgtttctactaaatgtgattttttcctgtcctcatcattttcgctttgcacacttcgttttgcttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGACTGTTGTGTTGTTGAACCTTGCTAGTACTACATTAAA
                ||| ||          || |  |||||  ||||     |||  || | ||  || |||  |   | |  |    |     |||  |  || ||||| |  | |||||  |||||||||| ||||| ||||| |||||||||||||||||||| ||| | || ||           |   ||| |     |  |
--------------gtattgcaatgccttgattactactttctgttaaaatc--tttggtcatctcagcaacatcatacttatatatctcttaacatgccatcatatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAGACAGCTACTGATTCTTATGAAAACCCGGGCTTTGAGTTCCTTTCTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67011780|gb|CO440529.1|CO440529
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6012720|gb|AW062157.1|AW062157
EST:     CAAAACTAAACAGCTCCTCATCTCAG                         GTGGTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: CAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32804124|gb|CD956360.1|CD956360
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6993917|gb|AW453131.1|AW453131
EST:     AGTTCCATGTGAGTTAGAGAGGGGCAAAACTAAACAGCTCCTCATCTCAG                         GTGGTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|17931807|gb|BM268767.1|BM268767
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859901|gb|CD999582.1|CD999582
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|37385755|gb|CF630034.1|CF630034
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6851575|gb|AW352585.1|AW352585
EST:     AGTTCCATGTGAGTTAGAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31558031|gb|CD527243.1|CD527243
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|148954707|gb|EC900159.2|EC900159
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTTTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32801615|gb|CD953851.1|CD953851
EST:     AGTTCCATGTGAGTTACAGAGGTGCAGAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5124298|gb|AI746034.1|AI746034
EST:     AGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGNCAGATGAA
genomic: AGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|18164129|gb|BM333968.1|BM333968
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|118406764|gb|EH038212.1|EH038212
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31997712|gb|CD661732.1|CD661732
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|67022635|gb|CO451384.1|CO451384
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|28985362|gb|CB350603.1|CB350603
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|37375358|gb|CF624110.1|CF624110
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|110218528|gb|EC900426.1|EC900426
EST:     GTTCCATTTGAGTTACAGAGGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTTTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTCCATGTGAGTTACAGA-GGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATG-A
EST: gi|5901282|gb|AW042382.1|AW042382
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|89759755|gb|DY688471.1|DY688471
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTTTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|4776010|gb|AI665013.1|AI665013
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60359682|gb|DN226655.1|DN226655
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6851488|gb|AW352498.1|AW352498
EST:     AGTTCCATGTGAGGTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTACGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60342007|gb|DN208980.1|DN208980
EST:     AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG                         GTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAGgtctagttcc ... ttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcctgtcctcatcattttcgctttgcacacttcgttttgcttttgtacagGTGTTGATCAATTGTCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGACTGTTGTGTTGTTGAACCTTGCTAGTACTACATTAAA
                                  cttcgttttgctttt  CT-rich tract
               atcatttt  TA-rich tract