1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgctatgttccactccccttgctttttctagtttctaagaccagtaaaacctatcagatgatatctggcactgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG
species | Zea mays |
transcript | GRMZM2G066496_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|67022635|gb|CO451384.1|CO451384
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|32830465|gb|CD970143.1|CD970143
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|32804124|gb|CD956360.1|CD956360
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|6993917|gb|AW453131.1|AW453131
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTAGAGAGGGGCAAAACTAEST: gi|17931807|gb|BM268767.1|BM268767
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|32859901|gb|CD999582.1|CD999582
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|37385755|gb|CF630034.1|CF630034
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TTATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|6851575|gb|AW352585.1|AW352585
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTAGAGAGGTGCAAAACTAEST: gi|31558031|gb|CD527243.1|CD527243
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|148954707|gb|EC900159.2|EC900159
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|32801615|gb|CD953851.1|CD953851
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAGAACTAEST: gi|18164129|gb|BM333968.1|BM333968
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|118406764|gb|EH038212.1|EH038212
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TTATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|31997712|gb|CD661732.1|CD661732
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: AAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|28985362|gb|CB350603.1|CB350603
genomic: AAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|37375358|gb|CF624110.1|CF624110
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TTATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|5901282|gb|AW042382.1|AW042382
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|89759755|gb|DY688471.1|DY688471
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|4776010|gb|AI665013.1|AI665013
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|60359682|gb|DN226655.1|DN226655
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAEST: gi|6851488|gb|AW352498.1|AW352498
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: CAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGGTACAGAGGTGCAAAACTAEST: gi|60342007|gb|DN208980.1|DN208980
genomic: CAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
EST: TTATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAA GGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
genomic: TCATCGCGGACACAAATATTGATGTGGAGTCAGCTGAGATTGATACTGAAgtatgctatg ... ctgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTA
ttctagtttctaagaccagtaaaacctatcagatgatatctggcactgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG
tttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatgttccactccccttgctttttctagtttctaagaccagtaaaacctatcagatgatatctggcactgtatacagGGTTTGGTTGCGAAGGACAAGTTCCATGTGAGTTACAGAGGTGCAAAACTAAACAGCTCCTCATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC