1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaactttgatcaattccatccccccatccccacccccaggccccacccacccacacactgaaacacacacaaaatcattactgctgcttcacttacaggttccaccaactcattggtgtcaattttttgttgaccctcctgcagGAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGAACCAAGAAGCCAAAGGATGCATAAGCAAGGATAAAACAGATTACAGGTTT
species | Zea mays |
transcript | GRMZM2G066413_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCGTTCTGTTNCT-CAGCACACCTATTTCGCCTGTCA-TGCACTAG GAACTGGTGCTGCATTAGCAGGTGGTTTCCTTTACTCGAGGTTGACAAGAEST: gi|67024608|gb|CO453357.1|CO453357
genomic: TCCTCCGTTCTGTT-CTTCAGCACACCTATTTCGCCTGTCAATGCACTAGgtaactttga ... cctcctgcagGAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGA
EST: CTCCGNTNNCTGT-CT-CAGCACACCTATTTTCGCCTGTCAATGCACTAG GAACTGGTGCTGCATTEST: gi|28982907|gb|BQ538405.2|BQ538405
genomic: CTCCGTT--CTGTTCTTCAGCACACCTATTT-CGCCTGTCAATGCACTAGgtaactttga ... cctcctgcagGAACTGGTGCTGCATT
EST: CTCCTCCGTTCTGTTCTTCAGCACACCTATTTCGCCTGTCAATGCACTAG GAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGAA
genomic: CTCCTCCGTTCTGTTCTTCAGCACACCTATTTCGCCTGTCAATGCACTAGgtaactttga ... cctcctgcagGAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGAA
cacttacaggttccaccaactcattggtgtcaattttttgttgaccctcctgcagGAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGAACCAAGAAGCCAAAGGATGCATAAGCAAGGATAAAACAGATTACAGGTTT
ccctcctgc CT-rich tract
aattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactttgatcaattccatccccccatccccacccccaggccccacccacccacacactgaaacacacacaaaatcattactgctgcttcacttacaggttccaccaactcattggtgtcaattttttgttgaccctcctgcagGAACTGGTGCTGCATTAGCAGGTGTTTTCCTTTACTCGAGGTTGACAAGAACCAAGAAGCCAAAGGATGCATAAGCAAGGATAAAACAGATTACAGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG