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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagtggtatttaaattaatcccccattgtgtcatggatgtatttgtaaattatgaagcctcgaaagtgacttagttttccatttttaaatcccatttcagGTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCCCAAAATCAAA

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 8
aagtggtatttaaattaatcccccattgtgtcatggatgtatttgtaaattatgaagcctcgaaagtg--acttagttttccatttttaaatcccattt-cagGTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCCCAAAATCAAA
      ||   |||   ||     |    || |   |     |||||  |         | | || |   | |||| | | |  |||||| ||  |||| ||||||||||| || |||||||||||||||| ||| ||| |||| |||||||||
---aattaaccaaaaccatttaaaaaatcgttaataaaagccttgtatttctctgccttttgtaattcttatttagctcttctattttaactcttattttcagGTTGAGAGTGAGTTTCAAAAAGCTTACGACAAAGGAATGCC-AAAATCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148965958|gb|EE016876.2|EE016876
EST:     TAACTGCACATCCTATGACACAATTTACCGCAGGAATAATGGCTCTTCAG                         GTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCC-AAAATCAAA
genomic: TAACTGCACATCCTATGACACAATTTACCGCAGGAATAATGGCTCTTCAGgtgagccctt ... cccatttcagGTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCCCAAAATCAAA
EST: gi|78088374|gb|DV516767.1|DV516767
EST:     TAACTGCACATCCTATGACACAATTTACCGCAGGAATAATGGCTCTTCAG                         GTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCC-AAAATCAAA
genomic: TAACTGCACATCCTATGACACAATTTACCGCAGGAATAATGGCTCTTCAGgtgagccctt ... cccatttcagGTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCCCAAAATCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattatgaagcctcgaaagtgacttagttttccatttttaaatcccatttcagGTTGAGAGCGAATTTCAAAAAGCTTACGGCAATGGATTGCCCAAAATCAAA
                                            tcccatttc  CT-rich tract
                             ttttccatttttaaat  TA-rich tract