1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atatgcttttctagtgtgtttttgacctttttctggtattttcttgtctctcctatgaaataaattgtattagttctttagcatttcatttgtgttgtagGAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGCTTGGTGTCATTTAAGATGGAAACTGAG
species | Zea mays |
transcript | GRMZM2G063775_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATCGACCACAATCTCCAGAAGATGGGTCTCTGGTGACAACCATGTGGAG GAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGCEST: gi|67018467|gb|CO447216.1|CO447216
genomic: GATCGACCACAATCTCCAGAAGATGGGTCTCTGGTGACAACCATGTGGAGgcaagtttcc ... tgtgttgtagGAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGC
EST: GATCGACCACAATCTCCAGAAGATGGGTCTCTGGTGACAACCATGTGGAG GAGCTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGC
genomic: GATCGACCACAATCTCCAGAAGATGGGTCTCTGGTGACAACCATGTGGAGgcaagtttcc ... tgtgttgtagGAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGC
gtctctcctatgaaataaattgtattagttctttagcatttcatttgtgttgtagGAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGCTTGGTGTCATTTAAGATGGAAACTGAG
tttcattt CT-rich tract
tatgaaataaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgcttttctagtgtgtttttgacctttttctggtattttcttgtctctcctatgaaataaattgtattagttctttagcatttcatttgtgttgtagGAACTAGTAGCTGGCTTTGATCAAGAAGCTGCAGCTGCAGTCATGGCACGCTTGGTGTCATTTAAGATGGAAACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tatgctt
- - - - - - - tgtgttt
- - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt