1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acctgttggcgactgcctgcgttctctggccaaattttgacgatggcttggattttgaacaggcaatgaactaaccgtgtcgagattgtggtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGCGTGGCGAGCCGGTGCCTCAGGAGCTGCTCGACCGGGTCCTGGCGGCCC
species | Zea mays |
transcript | GRMZM2G063151_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAG GACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGEST: gi|13558489|gb|BG549845.1|BG549845
genomic: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAGgtaataactg ... gtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGG
EST: AACTTCGCGCTTTTGACAATGCAAAGCCCCGTACCTACGTTGACCTTAAG GACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGEST: gi|16380090|gb|BI993311.1|BI993311
genomic: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAGgtaataactg ... gtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGG
EST: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAG GACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGEST: gi|60401229|gb|DN234036.1|DN234036
genomic: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAGgtaataactg ... gtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGG
EST: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAG GACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGG
genomic: AACTTCGCGCTTTTGACAATGCAAAGCACCGTACCTACGTTGACCTTAAGgtaataactg ... gtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGG
gcttggattttgaacaggcaatgaactaaccgtgtcgagattgtggtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGCGTGGCGAGCCGGTGCCTCAGGAGCTGCTCGACCGGGTCCTGGCGGCCC
aactaac putative branch site (score: 350)
attttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgttggcgactgcctgcgttctctggccaaattttgacgatggcttggattttgaacaggcaatgaactaaccgtgtcgagattgtggtgcgaacagGACAAATGGAAGACGCTGGTACACACAGCGAGCATCTCGCCGCAGCAGCGGCGTGGCGAGCCGGTGCCTCAGGAGCTGCTCGACCGGGTCCTGGCGGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-cctgttg
- - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa