1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgattcatatctgtttctgatactgtttcagtcatgtatgcattccttgtagataggttgataccttagtgacattgatcacttgtaatggaatcgctcaattttgctgtggacatgaaatcttgtctgttaattgctgtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTCCTACTGCTGCCGGAAGCTAAACGTGCTTTTGATCACTGATTGGTGGCT
species | Zea mays |
transcript | GRMZM2G061745_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCTGATCCGGAGCGTCATTGCGCTTCCCAATTTAATCAACAATAAG ATGCTAAACAAGGAGCCCGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|32943105|gb|CF047924.1|CF047924
genomic: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|32932870|gb|CF037682.1|CF037682
genomic: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|4730759|gb|AI649925.1|AI649925
genomic: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: TGATCCGGAGCGTCATTGCGCTTCCCAATTTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|71432656|gb|DR813706.1|DR813706
genomic: TGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: TTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|37384435|gb|CF629288.1|CF629288
genomic: TTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTEST: gi|5398737|gb|AI812202.1|AI812202
genomic: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
EST: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAG ATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
genomic: CTTCTCTGATCCGGAGCGTCATTGCGCTTCACAATTTAATCAACAATAAGgttgattcat ... gtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATT
tcgctcaattttgctgtggacatgaaatcttgtctgttaattgctgtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTCCTACTGCTGCCGGAAGCTAAACGTGCTTTTGATCACTGATTGGTGGCT
tgttaat putative branch site (score: 214)
tgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattcatatctgtttctgatactgtttcagtcatgtatgcattccttgtagataggttgataccttagtgacattgatcacttgtaatggaatcgctcaattttgctgtggacatgaaatcttgtctgttaattgctgtgattccagATGCTAAACAAGGAGCACGAGAAGGCCGAGGATTCGAAACCAACCGCCATTCCTACTGCTGCCGGAAGCTAAACGTGCTTTTGATCACTGATTGGTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG