1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatatatagtctatttcttgacgggaacattttctctagattttctctgtataaacattaatcacccatagtgttctaacaaggcttcactttagATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTAAGAGATGGCGGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
species | Zea mays |
transcript | GRMZM2G061419_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATTTGCAACTGGTGGGAAGACTTTCTTCTTGTGGGGTGGCTGTATGATG ATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCGGTGGATTAEST: gi|78090711|gb|DV519085.1|DV519085
genomic: GATTTGCAACTGGTGGGAAGACTTTCTTCTTGTGGGGTGGCTGTATGATGgtatatatag ... ttcactttagATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTA
EST: GATTTGCAACTGGTGGGAAGACTTTCTTCTTGTGGGGTGGCTGTATGATG ATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTA
genomic: GATTTGCAACTGGTGGGAAGACTTTCTTCTTGTGGGGTGGCTGTATGATGgtatatatag ... ttcactttagATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTA
ttttctctgtataaacattaatcacccatagtgttctaacaaggcttcactttagATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTAAGAGATGGCGGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
ttctaac putative branch site (score: 92)
cttcacttt putative PPT
tgtataaacattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatagtctatttcttgacgggaacattttctctagattttctctgtataaacattaatcacccatagtgttctaacaaggcttcactttagATGCATGCTGATGATTTTAGGCAAGACCGGTACGGCATTGTCAGTGGATTAAGAGATGGCGGTTACTCAGATGATATGACACTCGCTGCAATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG